![]() ![]() Rgeos_R2geos. Rgeos_R2geos.c(67): error: expected an expression I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c rgeos_R2geos.c -o rgeos_R2geos.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c rgeos.c -o rgeos.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c local_stubs.c -o local_stubs.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c init.c -o init.o I/usr/local/include -fpic -O3 -ipo -mkl -daal=parallel -qopenmp -xCORE-AVX2 -fPIC -c -o dummy.o yesĬonfigure: PKG_CPPFLAGS: -I/p/system/packages/geos/3.6.1/includeĬonfigure: PKG_LIBS: -L/p/system/packages/geos/3.6.1/lib -lgeos -L/p/system/packages/geos/3.6.1/lib -lgeos_c yesĬhecking geos: linking with libgeos_c. yesĬhecking geos_c.h presence and usability. It supports setting (conditional) breakpoints and. p/system/packages/geos/3.6.1/bin/geos-configĬhecking geos version at least 3.2.0. Source code: Lib/pdb.py The module pdb defines an interactive source code debugger for Python programs. Restarting R and running install.packages() again:Ĭhecking for geos-config. Now, module list will show three loaded modules:Īnother error: a compiler-related problem Yes! So we load the GEOS module before starting R again. p/system/packages/geos/3.6.1/bin/geos-config There's a couple, so we'll pick the latest. We know that GEOS is installed via a module, which should Library, in particular the program which can inform it about the setup The R installation doesn't know where to find the components of the base GEOS Attached is the entire output of the command. We see that the installation failed, ( non-zero exit status warning at theĮRROR: configuration failed for package 'rgeos', and the line before that After the code runs, I receive an error message saying that the installation had 'non-zero exit status'. Installation of package 'rgeos' had non-zero exit status '/p/tmp/R_tmp/RtmpkJJdOQ/downloaded_packages' im trying install the package 'Raster', but appear the error installation of package ‘raster’ had non-zero exit status. * restoring previous '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4/rgeos' Castor Connect Helpdesk Status page Table of Contents Keep packages updates Can't recycle Non-zero exit status Output containing blanks and NAs This article contains solutions to the most common error messages and issues when using the Castor EDC R Package. * removing '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4/rgeos' ** package 'rgeos' successfully unpacked and MD5 sums checkedĬonfigure: error: geos-config not found or not executable.ĮRROR: configuration failed for package 'rgeos' Installing package into '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4'Ĭontent type 'application/octet-stream' length 252833 bytes (246 KB) ![]() Now we start R and use install.packages(): ![]()
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